Crystallographic Fragment Screening of an Entire Library
Radeva, N., Heine, A., Klebe, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Endothiapepsin | 330 | Cryphonectria parasitica | Mutation(s): 0  EC: 3.4.23.22 | ||
UniProt | |||||
Find proteins for P11838 (Cryphonectria parasitica) Explore P11838  Go to UniProtKB:  P11838 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11838 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE Query on PGE | G [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
F05 Query on F05 | E [auth A] | 1H-isoindol-3-amine C8 H8 N2 MTKKGHVQPVOXIL-UHFFFAOYSA-N | |||
GOL Query on GOL | B [auth A], C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
DMS Query on DMS | F [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
ACT Query on ACT | D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 45.281 | α = 90 |
b = 72.998 | β = 109.5 |
c = 52.759 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
Coot | model building |
PHASER | phasing |
XDS | data reduction |
XSCALE | data scaling |