4XYJ

Crystal structure of human phosphofructokinase-1 in complex with ATP and Mg, Northeast Structural Genomics Consortium Target HR9275


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 4XYJ

Classification: TRANSFERASE

Total Structure Weight: 718837.38

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent 6-phosphofructokinase, platelet type A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 812 Homo sapiens EC#: 2.7.1.11 IUBMB
Gene Name(s): PFKP Gene View PFKF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B, C, D, E, F, G, H ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B, C, D, E, F, G, H PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO
Query on CO

B, F COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.221
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 137.20 α = 90.00
b = 159.33 β = 104.20
c = 170.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-02-02
  • Released Date: 2015-05-20
  • Deposition author(s): Forouhar, F., Webb, B.A., Szu, F.-E., Seetharaman, J., Barber, D.L., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History

  • Version 1_0: 2015-05-20

    Type: Initial release

  • Version 1_1: 2015-06-03

    Type: Database references

  • Version 1_2: 2015-07-15

    Type: Database references