4XVO

L,D-transpeptidase from Mycobacterium smegmatis

Structural Biology Knowledgebase: 4XVO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4XVO

Classification: TRANSFERASE

Total Structure Weight: 72179.20

Macromolecule Entities
Molecule Chains Length Organism Details
L,D-transpeptidase A, B, C 223 Mycobacterium smegmatis Fragment: UNP residues 71-290
Gene Name(s): MSMEI_3449
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 92.39 α = 90.00
b = 160.05 β = 90.00
c = 209.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-01-27
  • Released Date: 2015-02-11
  • Deposition author(s): Osipiuk, J., Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release