4XK4

E. coli transcriptional regulator RUTR with dihydrouracil


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 4XK4

Classification: Transcription Regulator

Total Structure Weight: 95322.80

Macromolecule Entities
Molecule Chains Length Organism Details
HTH-type transcriptional regulator RutR A, B, C, D 212 Escherichia coli Gene Name(s): rutR ycdC b1013 JW0998
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DUC
Query on DUC

A, B, C, D DIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE
DIHYDROURACIL (Synonym)
C4 H6 N2 O2
OIVLITBTBDPEFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.194
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 50.89 α = 88.37
b = 55.67 β = 88.80
c = 85.24 γ = 62.37

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-01-09
  • Released Date: 2015-05-13
  • Deposition author(s): Shumilin, I.A., Cooper, D.R., Shabalin, I.G., Grabowski, M., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Revision History

No revisions since initial release