Periplasmic repressor protein YfiR at 1.8 Angstroms resolution
Kauer, S., Schirmer, T.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
YfiR | 164 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0  Gene Names: yfiR, PA1121 | ||
UniProt | |||||
Find proteins for Q9I4L4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I4L4  Go to UniProtKB:  Q9I4L4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9I4L4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
P33 Query on P33 | E [auth A] | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N | |||
TLA Query on TLA | F [auth B], G [auth C], H [auth D] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.691 | α = 90 |
b = 68.073 | β = 111.42 |
c = 71.989 | γ = 90 |
Software Name | Purpose |
---|---|
SCALA | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
SHELX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Swiss National Science Foundation | Switzerland | 31003A-138414 |