4WZ2

Crystal structure of U-box 2 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris, Ile175Met mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.41 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 4WZ2

Classification: LIGASE

Total Structure Weight: 36061.88

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase LubX A, B, C 101 Legionella pneumophila EC#: 6.3.2 IUBMB
Mutation: I175M
Gene Name(s): lubX lpp2887
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEZ
Query on HEZ

A, B HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 160.03 α = 90.00
b = 160.03 β = 90.00
c = 160.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-11-18
  • Released Date: 2015-01-28
  • Deposition author(s): Stogios, P.J., Qualie, A.T., Skarina, T., Nocek, B., Di Leo, R., Yim, V., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2015-01-28

    Type: Initial release

  • Version 1_1: 2015-07-29

    Type: Database references

  • Version 1_2: 2015-08-19

    Type: Database references

  • Version 1_3: 2017-09-20

    Type: Author supporting evidence, Database references, Derived calculations