4V98

The 8S snRNP Assembly Intermediate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 4V98

Classification: SPLICING

Total Structure Weight: 2376864.25

Macromolecule Entities
Molecule Chains Length Organism Details
Small nuclear ribonucleoprotein Sm D1 AA, AI, AQ..., AY, Ag, Ao, Aw, BA, BI, BQ, BY, Bg, Bo, Bw, CA, CI, CQ, CY, Cg, CoAA, AI, AQ, AY, Ag, Ao, Aw, BA, BI, BQ, BY, Bg, Bo, Bw, CA, CI, CQ, CY, Cg, Co 119 Homo sapiens Gene Name(s): SNRPD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein Sm D2 AB, AJ, AR..., AZ, Ah, Ap, Ax, BB, BJ, BR, BZ, Bh, Bp, Bx, CB, CJ, CR, CZ, Ch, CpAB, AJ, AR, AZ, Ah, Ap, Ax, BB, BJ, BR, BZ, Bh, Bp, Bx, CB, CJ, CR, CZ, Ch, Cp 118 Homo sapiens Gene Name(s): SNRPD2 Gene View SNRPD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein E AC, AK, AS..., Aa, Ai, Aq, Ay, BC, BK, BS, Ba, Bi, Bq, By, CC, CK, CS, Ca, Ci, CqAC, AK, AS, Aa, Ai, Aq, Ay, BC, BK, BS, Ba, Bi, Bq, By, CC, CK, CS, Ca, Ci, Cq 92 Homo sapiens Gene Name(s): SNRPE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein F AD, AL, AT..., Ab, Aj, Ar, Az, BD, BL, BT, Bb, Bj, Br, Bz, CD, CL, CT, Cb, Cj, CrAD, AL, AT, Ab, Aj, Ar, Az, BD, BL, BT, Bb, Bj, Br, Bz, CD, CL, CT, Cb, Cj, Cr 86 Homo sapiens Gene Name(s): SNRPF Gene View PBSCF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LD23602p A1, AE, AM..., AU, Ac, Ak, As, B1, BE, BM, BU, Bc, Bk, Bs, CE, CM, CU, Cc, Ck, CsA1, AE, AM, AU, Ac, Ak, As, B1, BE, BM, BU, Bc, Bk, Bs, CE, CM, CU, Cc, Ck, Cs 124 Drosophila melanogaster Fragment: UNP residues 1-122
Gene Name(s): Smn CG16725
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CG10419 A2, AF, AN..., AV, Ad, Al, At, B2, BF, BN, BV, Bd, Bl, Bt, CF, CN, CV, Cd, Cl, CtA2, AF, AN, AV, Ad, Al, At, B2, BF, BN, BV, Bd, Bl, Bt, CF, CN, CV, Cd, Cl, Ct 247 Drosophila melanogaster Gene Name(s): Gem2 CG10419
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Icln A3, AG, AO..., AW, Ae, Am, Au, B3, BG, BO, BW, Be, Bm, Bu, CG, CO, CW, Ce, Cm, CuA3, AG, AO, AW, Ae, Am, Au, B3, BG, BO, BW, Be, Bm, Bu, CG, CO, CW, Ce, Cm, Cu 186 Drosophila melanogaster Gene Name(s): icln CG4924
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small nuclear ribonucleoprotein G A4, AH, AP..., AX, Af, An, Av, B4, BH, BP, BX, Bf, Bn, Bv, CH, CP, CX, Cf, Cn, CvA4, AH, AP, AX, Af, An, Av, B4, BH, BP, BX, Bf, Bn, Bv, CH, CP, CX, Cf, Cn, Cv 76 Homo sapiens Gene Name(s): SNRPG Gene View PBSCG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A2, Ad, At, B2, BF, BV, Bd, Bt, CF, Cl SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.232
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 150.93 α = 90.00
b = 356.81 β = 97.31
c = 230.75 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-05-15
  • Released Date: 2014-07-09
  • Deposition author(s): Grimm, C., Pelz, J.P., Schindelin, H., Diederichs, K., Kuper, J., Kisker, C.
  • Previous versions: 1VU2 1VU3 4F77

Revision History

  • 2014-12-10
    Type: Other