4V8M

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.57 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4V8M

Classification: RIBOSOME

Total Structure Weight: 3603269.25


Macromolecule Entities
Molecule Chains Length Organism Details
40S RIBOSOMAL PROTEIN S3A, PUTATIVE A0 256 Trypanosoma brucei Gene Name(s): Tb10.70.3360
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S4, PUTATIVE A1 273 Trypanosoma brucei Gene Name(s): Tb11.02.1085 Tb11.02.1090
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S5, PUTATIVE A2 190 Trypanosoma brucei Gene Name(s): Tb11.02.4170
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S6 A3 250 Trypanosoma brucei Gene Name(s): Tb10.100.0080
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN S7, PUTATIVE A4 202 Trypanosoma brucei Gene Name(s): Tb09.160.2550
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S8 A5 220 Trypanosoma brucei Gene Name(s): Tb927.8.6150 Tb927.8.6160
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S9, PUTATIVE A6 190 Trypanosoma brucei Gene Name(s): Tb10.70.1380 Tb927.8.1110
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN A7 318 Trypanosoma brucei Gene Name(s): Tb11.01.3170 Tb11.01.3180
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN S29, PUTATIVE A8 57 Trypanosoma brucei
UBIQUITIN/RIBOSOMAL PROTEIN S27A, PUTATIVE A9 153 Trypanosoma brucei Gene Name(s): Tb927.7.3680
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN SA, PUTATIVE AC 277 Trypanosoma brucei Gene Name(s): Tb11.01.2680
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S10, PUTATIVE AD 172 Trypanosoma brucei Gene Name(s): Tb10.70.1670
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEINS S11, PUTATIVE AE 174 Trypanosoma brucei Gene Name(s): Tb10.70.7695
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S12 AF 144 Trypanosoma brucei Gene Name(s): Tb11.02.1830
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S13, PUTATIVE AG 151 Trypanosoma brucei Gene Name(s): Tb10.61.1390 Tb927.2.5910
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S14 AH 144 Trypanosoma brucei Gene Name(s): Tb11.0290 Tb11.0390 Tb927.6.4980
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S15, PUTATIVE AI 152 Trypanosoma brucei Gene Name(s): Tb927.7.2340 Tb927.7.2370
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S15A, PUTATIVE AJ 130 Trypanosoma brucei Gene Name(s): Tb11.02.4000 Tb927.3.4360
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S16, PUTATIVE AK 149 Trypanosoma brucei Gene Name(s): Tb927.7.1040 Tb927.7.1050
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S17, PUTATIVE AL 142 Trypanosoma brucei Gene Name(s): Tb11.01.3675 Tb11.01.3676
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S18, PUTATIVE AM 153 Trypanosoma brucei Gene Name(s): Tb10.70.1730 Tb10.70.1740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN S19, PUTATIVE AO 167 Trypanosoma brucei Gene Name(s): Tb927.4.1860
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S2, PUTATIVE AP 266 Trypanosoma brucei Gene Name(s): Tb10.61.1960 Tb10.61.2070
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN S20, PUTATIVE AQ 117 Trypanosoma brucei
40S RIBOSOMAL PROTEIN S21, PUTATIVE AR 194 Trypanosoma brucei Gene Name(s): Tb11.02.4360
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S23, PUTATIVE AS 143 Trypanosoma brucei Gene Name(s): Tb10.70.7020 Tb10.70.7030
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S24 AT 137 Trypanosoma brucei Gene Name(s): Tb10.6k15.3340 Tb10.6k15.3350
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S25, PUTATIVE AU 113 Trypanosoma brucei Gene Name(s): Tb10.70.4800 Tb927.3.1370
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN S26, PUTATIVE AV 111 Trypanosoma brucei Gene Name(s): Tb11.01.0355
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S27, PUTATIVE AW 86 Trypanosoma brucei Gene Name(s): Tb11.01.1475
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S3, PUTATIVE AX 214 Trypanosoma brucei Gene Name(s): Tb10.26.0370
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S30, PUTATIVE AY 66 Trypanosoma brucei Gene Name(s): Tb927.6.2110
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S33, PUTATIVE AZ 103 Trypanosoma brucei Gene Name(s): Tb927.7.230 Tb927.7.240
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L18 BI 193 Trypanosoma brucei Gene Name(s): RPL18-A Tb10.6k15.0410 RPL18-B Tb11.02.1840
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN BJ 214 Trypanosoma brucei Gene Name(s): Tb10.05.0220 Tb11.01.1470
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L10, PUTATIVE BK 213 Trypanosoma brucei Gene Name(s): Tb09.211.0110 Tb09.211.0340
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L11, PUTATIVE BL 194 Trypanosoma brucei Gene Name(s): Tb09.160.5580 Tb09.160.5590
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L12, PUTATIVE BM 164 Trypanosoma brucei Gene Name(s): Tb927.8.6030
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L13 BN 218 Trypanosoma brucei Gene Name(s): Tb927.3.3320
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L13A, PUTATIVE BO 222 Trypanosoma brucei Gene Name(s): Tb927.4.3550 Tb927.5.1610
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROBABLE 60S RIBOSOMAL PROTEIN L14 BP 189 Trypanosoma brucei Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L15 BQ 221 Trypanosoma brucei Gene Name(s): Tb09.244.2720
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L17, PUTATIVE BR 166 Trypanosoma brucei Gene Name(s): Tb10.61.2090 Tb11.02.2430
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L18A BS 179 Trypanosoma brucei Gene Name(s): Tb10.70.3510 Tb11.01.5720
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L19, PUTATIVE BT 260 Trypanosoma brucei Gene Name(s): Tb927.7.5000 Tb927.7.5020
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L21E, PUTATIVE BU 159 Trypanosoma brucei Gene Name(s): Tb11.0880 Tb11.50.0005
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L22, PUTATIVE BV 130 Trypanosoma brucei Gene Name(s): Tb11.01.1920
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L23, PUTATIVE BW 139 Trypanosoma brucei Gene Name(s): Tb09.211.2630 Tb09.211.2640
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L23A BX 164 Trypanosoma brucei Gene Name(s): Tb927.7.5170
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L24, PUTATIVE BY 125 Trypanosoma brucei Gene Name(s): Tb10.70.1540
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L26, PUTATIVE BZ 143 Trypanosoma brucei Gene Name(s): Tb09.211.4850
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L27, PUTATIVE Ba 133 Trypanosoma brucei Gene Name(s): Tb11.01.7535 Tb11.01.7545
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L27A Bb 145 Trypanosoma brucei Gene Name(s): Tb09.211.2650 Tb09.v1.0640
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L28, PUTATIVE Bc 146 Trypanosoma brucei Gene Name(s): Tb11.02.4050 Tb11.02.4070
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L29, PUTATIVE Bd 71 Trypanosoma brucei Gene Name(s): Tb11.01.1790
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L2, PUTATIVE Be 260 Trypanosoma brucei Gene Name(s): Tb11.01.7960 Tb927.5.1110
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE Bf 429 Trypanosoma brucei Gene Name(s): Tb927.4.1800
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L30 Bg 105 Trypanosoma brucei Gene Name(s): Tb10.70.3170
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL SUBUNIT PROTEIN L31, PUTATIVE Bh 188 Trypanosoma brucei Gene Name(s): Tb09.211.3270 Tb09.211.3280
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L32, PUTATIVE Bi 132 Trypanosoma brucei Gene Name(s): Tb10.100.0155
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L34, PUTATIVE Bj 170 Trypanosoma brucei Gene Name(s): Tb11.01.1480
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L35, PUTATIVE Bk 127 Trypanosoma brucei Gene Name(s): Tb09.160.0700 Tb09.160.0710
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L35A, PUTATIVE Bl 149 Trypanosoma brucei Gene Name(s): Tb927.4.2180
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L36, PUTATIVE Bm 109 Trypanosoma brucei Gene Name(s): Tb09.244.2725
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L37 Bn 84 Trypanosoma brucei Gene Name(s): Tb09.211.0865 Tb11.02.0500
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L37A, PUTATIVE Bo 93 Trypanosoma brucei Gene Name(s): Tb10.100.0110 Tb10.70.0465
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L38, PUTATIVE Bp 82 Trypanosoma brucei Gene Name(s): Tb09.160.0815
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L39, PUTATIVE Bq 51 Trypanosoma brucei Gene Name(s): Tb927.8.5260
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L4 Br 374 Trypanosoma brucei Gene Name(s): Tb927.3.5050
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UBIQUITIN-60S RIBOSOMAL PROTEIN L40 Bs 128 Trypanosoma brucei Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L44 Bt 106 Trypanosoma brucei Gene Name(s): Tb11.02.0740 Tb927.2.6090
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L5, PUTATIVE Bu 308 Trypanosoma brucei Gene Name(s): Tb09.244.2730 Tb09.244.2740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L6, PUTATIVE Bv 192 Trypanosoma brucei Gene Name(s): Tb10.26.0560
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L7, PUTATIVE Bw 257 Trypanosoma brucei Gene Name(s): Tb927.7.1740 Tb927.7.1750
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L7A, PUTATIVE Bx 276 Trypanosoma brucei Gene Name(s): Tb927.8.1330 Tb927.8.1340
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L9, PUTATIVE By 189 Trypanosoma brucei Gene Name(s): Tb10.70.7010
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNA BA 1847 Trypanosoma brucei
BETA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNA BB 1465 Trypanosoma brucei
5.8S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT BC 169 Trypanosoma brucei
5S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT BD 119 Trypanosoma brucei
SHORT RRNA-I OF THE LARGE RIBOSOMAL SUBUNIT BE 210 Trypanosoma brucei
SHORT RRNA-II OF THE LARGE RIBOSOMAL SUBUNIT BF 73 Trypanosoma brucei
SHORT RRNA-III OF THE LARGE RIBOSOMAL SUBUNIT BG 182 Trypanosoma brucei
SHORT RRNA-IV OF THE LARGE RIBOSOMAL SUBUNIT BH 135 Trypanosoma brucei
18S RRNA OF THE SMALL RIBOSOMAL SUBUNIT AA 2251 Trypanosoma brucei
E-SITE TRNA AB 73 Trypanosoma brucei


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.57 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-12-09
  • Released Date: 2014-07-09
  • Deposition author(s): Hashem, Y., des Georges, A., Fu, J., Buss, S.N., Jossinet, F., Jobe, A., Zhang, Q., Liao, H.Y., Grassucci, R.A., Bajaj, C., Westhof, E., Madison-Antenucci, S., Frank, J.
  • Previous versions: 3ZEQ 3ZEX 3ZEY 3ZF7

Revision History

  • 2014-12-10
    Type: Other
  • 2015-04-22
    Type: Other
  • 2017-08-02
    Type: Advisory, Atomic model, Data collection, Derived calculations