4V7Q

Atomic model of an infectious rotavirus particle


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4V7Q

Classification: VIRUS

Total Structure Weight: 1440164.13

Macromolecule Entities
Molecule Chains Length Organism Details
Core scaffold protein AA, AB 800 Rotavirus a Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Intermediate capsid protein VP6 AC, AD, AE..., AF, AG, AH, AI, AJ, AK, AL, AM, AN, AOAC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO 397 Rotavirus a Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Outer layer protein VP7 BA, BF, BG..., BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQBA, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ 276 Rotavirus a Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Outer capsid protein VP4 BX, BY, BZ 776 Rotavirus a Mutation: P37L, K180E, R187K, C267Y, T379I
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

BA, BF, BH, BI, BM, BN, BO, BQ N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

AC, AF, AK, AN, AO ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2010-05-13
  • Released Date: 2014-07-09
  • Deposition author(s): Settembre, E.C., Chen, J.Z., Dormitzer, P.R., Grigorieff, N., Harrison, S.C
  • This entry supercedes: 3IYU 3N09

Revision History

  • Version 1_0: 2014-07-09

    Type: Initial release

  • Version 1_1: 2014-12-10

    Type: Other