4V6W

Structure of the D. melanogaster 80S ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.0 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4V6W

Classification: RIBOSOME

Total Structure Weight: 3670250.00


Macromolecule Entities
Molecule Chains Length Organism Details
Elongation factor 2 Az 844 Drosophila melanogaster Gene Name(s): EF2 Ef2b CG2238
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Guanine nucleotide-binding protein subunit beta-like protein Ag 318 Drosophila melanogaster Gene Name(s): Rack1 CG7111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S20 AU 120 Drosophila melanogaster Gene Name(s): RpS20 CG15693
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S10a AK 163 Drosophila melanogaster Gene Name(s): RpS10a RpS10 CG12275
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S14 AO 151 Drosophila melanogaster Gene Name(s): RpS14b CG1527
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S23 AX 143 Drosophila melanogaster Gene Name(s): RpS23 CG8415
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S12 AM 139 Drosophila melanogaster Gene Name(s): RpS12 RpS12E CG11271
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S18 AS 152 Drosophila melanogaster Gene Name(s): RpS18 CG8900
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S29 Ad 56 Drosophila melanogaster Gene Name(s): RpS29 CG8495
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S13 AN 151 Drosophila melanogaster Gene Name(s): RpS13 M(2)32A Rp17 CG13389
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S11 AL 155 Drosophila melanogaster Gene Name(s): RpS11 CG8857
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S17 AR 131 Drosophila melanogaster Gene Name(s): RpS17 M(3)67C CG3922
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S15, isoform A AP 148 Drosophila melanogaster Gene Name(s): RpS15 CG8332 Dmel_CG8332
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S19a AT 156 Drosophila melanogaster Gene Name(s): RpS19a RpS19 CG4464
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S3a AB 268 Drosophila melanogaster Gene Name(s): RpS3A C3 Gene View M(4)101 CG2168
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein SA AA 313 Drosophila melanogaster Gene Name(s): sta CG14792
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S21 AV 83 Drosophila melanogaster Mutation: E2Q, N8F, H25G, V32I, L34M, S35N, I36V, E58A, C68S, V70L, K75A, I79V, T80S
Gene Name(s): RpS21 oho23B CG2986
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S24 AY 131 Drosophila melanogaster Gene Name(s): RpS24 CG3751 Dmel_CG3751
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S25 AZ 117 Drosophila melanogaster Gene Name(s): RpS25 RpS31 CG6684
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S26 Aa 114 Drosophila melanogaster Gene Name(s): RpS26 CG10305
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S27 Ab 84 Drosophila melanogaster Gene Name(s): RpS27 CG10423 Dmel_CG10423
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S28 Ac 65 Drosophila melanogaster Gene Name(s): RpS28b CG2998
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S3 AD 246 Drosophila melanogaster Gene Name(s): RpS3 M(3)95A CG6779
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S30, isoform A Ae 132 Drosophila melanogaster Gene Name(s): RpS30 CG15697 Dmel_CG15697
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S27a Af 80 Drosophila melanogaster Gene Name(s): RpS27A UB3-D UBI-F80 Ubi-m CG5271
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S9 AJ 195 Drosophila melanogaster Gene Name(s): RpS9 CG3395
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S4 AE 261 Drosophila melanogaster Gene Name(s): RpS4 RP4 CG11276
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S2 AC 267 Drosophila melanogaster Gene Name(s): RpS2 sop CG5920
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S6 AG 248 Drosophila melanogaster Gene Name(s): RpS6 hen l(1)air8 CG10944
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S5a AF 228 Drosophila melanogaster Gene Name(s): RpS5a M(1)15D RpS5 CG8922
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S7 AH 194 Drosophila melanogaster Gene Name(s): RpS7 CG1883
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S15Aa AW 130 Drosophila melanogaster Gene Name(s): RpS15Aa RpS15A CG2033
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S8 AI 208 Drosophila melanogaster Gene Name(s): RpS8 CG7808
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S ribosomal protein S16 AQ 148 Drosophila melanogaster Gene Name(s): RpS16 CG4046
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Vig2, isoform B Ah 121 Drosophila melanogaster Mutation: E212K, D213E, S215P, Q217E, L226I, R227Q, D228N
Gene Name(s): vig2 CG11844 Dmel_CG11844
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L10a-2 Cz 218 Drosophila melanogaster Gene Name(s): RpL10Ab CG7283
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S acidic ribosomal protein P0 Cq 223 Drosophila melanogaster Fragment: SEE REMARK 999
60S ribosomal protein L12 CK 165 Drosophila melanogaster Gene Name(s): RpL12 CG3195 Dmel_CG3195
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L13a CO 205 Drosophila melanogaster Gene Name(s): RpL13A CG1475
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L13 CL 218 Drosophila melanogaster Gene Name(s): RpL13 bbc1 CG4651
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L23 CV 140 Drosophila melanogaster Gene Name(s): RpL23 RpL17A CG3661
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L14 CM 166 Drosophila melanogaster Gene Name(s): RpL14 CG6253
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L27a Ca 149 Drosophila melanogaster Gene Name(s): RpL27A RpL27a2 RpL27Aa RpL27Ab CG15442
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L15 CN 204 Drosophila melanogaster Gene Name(s): RpL15 ZITI CG17420
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L10 CI 218 Drosophila melanogaster Gene Name(s): RpL10 Qm CG17521
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L5 CD 299 Drosophila melanogaster Gene Name(s): RpL5 yip6 CG17489
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L18 CQ 188 Drosophila melanogaster Gene Name(s): RpL18 CG8615
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L19 CR 203 Drosophila melanogaster Gene Name(s): RpL19 M(2)60E CG2746
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L8 CA 256 Drosophila melanogaster Gene Name(s): RpL8 CG1263
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L18a CS 177 Drosophila melanogaster Gene Name(s): RpL18A CG6510
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L21 CT 159 Drosophila melanogaster Gene Name(s): RpL21 CG12775 Dmel_CG12775
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L17 CP 186 Drosophila melanogaster Gene Name(s): RpL17 CG3203
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L22 CU 299 Drosophila melanogaster Gene Name(s): RpL22 CG7434
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L23A CX 277 Drosophila melanogaster Gene Name(s): RpL23A RpL23a CG7977 Dmel_CG7977
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L26 CY 149 Drosophila melanogaster Gene Name(s): RpL26 CG6846 Dmel_CG6846
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L24 CW 155 Drosophila melanogaster Gene Name(s): RpL24 CG9282
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L27 CZ 135 Drosophila melanogaster Gene Name(s): RpL27 CG4759 Dmel_CG4759
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L28 Cr 144 Drosophila melanogaster Gene Name(s): RpL28 CG12740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L35 Ch 123 Drosophila melanogaster Gene Name(s): RpL35 RpL35-RB CG4111 Dmel_CG4111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L29 Cb 76 Drosophila melanogaster Gene Name(s): RpL29 RpL43 CG10071
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L3 CB 416 Drosophila melanogaster Gene Name(s): RpL3 CG4863
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L7 CF 252 Drosophila melanogaster Gene Name(s): RpL7 CG4897
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L30 Cc 111 Drosophila melanogaster Gene Name(s): RpL30 CG10652 Dmel_CG10652
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L31 Cd 124 Drosophila melanogaster Gene Name(s): RpL31 CG1821
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L32 Ce 134 Drosophila melanogaster Gene Name(s): RpL32 M(3)99D rp49 CG7939
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L35A Cf 157 Drosophila melanogaster Gene Name(s): RpL35A CG2099 Dmel_CG2099
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L34a Cg 162 Drosophila melanogaster Gene Name(s): RpL34a CG6090-RA CG6090 Dmel_CG6090
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L36 Ci 115 Drosophila melanogaster Gene Name(s): RpL36 M(1)1B CG7622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L37-A Cj 93 Drosophila melanogaster Gene Name(s): RpL37a CG9091
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L38 Ck 70 Drosophila melanogaster Gene Name(s): RpL38 CG18001
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L39 Cl 51 Drosophila melanogaster Gene Name(s): RpL39 rp46 RpL46 CG3997
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L4 CC 401 Drosophila melanogaster Gene Name(s): RpL4 RpL1 CG5502
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L40 Cm 52 Drosophila melanogaster Gene Name(s): RpL40 Ubi-f UBI-F52 CG2960
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L41 Cn 25 Drosophila melanogaster Gene Name(s): RpL41 CG30425 Dmel_CG30425
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L37a Cp 92 Drosophila melanogaster Gene Name(s): RpL37A CG5827
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L36A Co 104 Drosophila melanogaster Gene Name(s): RpL36A CG7424 Dmel_CG7424
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L11 CJ 184 Drosophila melanogaster Gene Name(s): RpL11 RPL11A CG7726
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L9 CH 190 Drosophila melanogaster Gene Name(s): RpL9 M(2)32D CG6141
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L6, isoform A CE 243 Drosophila melanogaster Gene Name(s): RpL6 CG11522 Dmel_CG11522
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S ribosomal protein L7a CG 271 Drosophila melanogaster Gene Name(s): RpL7A SURF-3 CG3314
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
18S ribosomal RNA B2 1995 Drosophila melanogaster
E-tRNA BC 75 Drosophila melanogaster
28S ribosomal RNA A5 3970 Drosophila melanogaster
2S ribosomal RNA A9 30 Drosophila melanogaster
5S ribosomal RNA A7 120 Drosophila melanogaster
5.8S ribosomal RNA A8 123 Drosophila melanogaster


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.0 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-02-27
  • Released Date: 2014-07-09
  • Deposition author(s): Anger, A.M., Armache, J.-P., Berninghausen, O., Habeck, M., Subklewe, M., Wilson, D.N., Beckmann, R.
  • Previous versions: 3J38 3J39 3J3C 3J3E

Revision History

  • Version 1_0: 2014-07-09

    Type: Initial release

  • Version 1_1: 2014-12-10

    Type: Other

  • Version 1_2: 2015-04-08

    Type: Other