4V4G

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 11.5 Å
  • R-Value Free: 0.401
  • R-Value Work: 0.395

Literature

Macromolecules
Sequence Display for 4V4G

Classification: RIBOSOME

Total Structure Weight: 10637747.00


Macromolecule Entities
Molecule Chains Length Organism Details
30S ribosomal protein S2 AB, CB, EB, GB, IB 234 Escherichia coli
30S ribosomal protein S3 AC, CC, EC, GC, IC 206 Escherichia coli
30S ribosomal protein S4 AD, CD, ED, GD, ID 208 Escherichia coli
30S ribosomal protein S5 AE, CE, EE, GE, IE 150 Escherichia coli
30S ribosomal protein S6 AF, CF, EF, GF, IF 101 Escherichia coli
30S ribosomal protein S7 AG, CG, EG, GG, IG 155 Escherichia coli
30S ribosomal protein S8 AH, CH, EH, GH, IH 138 Escherichia coli
30S ribosomal protein S9 AI, CI, EI, GI, II 127 Escherichia coli
30S ribosomal protein S10 AJ, CJ, EJ, GJ, IJ 98 Escherichia coli
30S ribosomal protein S11 AK, CK, EK, GK, IK 119 Escherichia coli
30S ribosomal protein S12 AL, CL, EL, GL, IL 124 Escherichia coli
30S ribosomal protein S13 AM, CM, EM, GM, IM 125 Escherichia coli
30S ribosomal protein S14 AN, CN, EN, GN, IN 60 Escherichia coli
30S ribosomal protein S15 AO, CO, EO, GO, IO 88 Escherichia coli
30S ribosomal protein S16 AP, CP, EP, GP, IP 83 Escherichia coli
30S ribosomal protein S17 AQ, CQ, EQ, GQ, IQ 104 Escherichia coli
30S ribosomal protein S18 AR, CR, ER, GR, IR 73 Escherichia coli
30S ribosomal protein S19 AS, CS, ES, GS, IS 80 Escherichia coli
30S ribosomal protein S20 AT, CT, ET, GT, IT 99 Escherichia coli
protein Y Aa, Ca, Ea, Ga, Ia 90 Escherichia coli
50S ribosomal protein L2 BD, DD, FD, HD, JD 270 Escherichia coli
50S ribosomal protein L3 BE, DE, FE, HE, JE 205 Escherichia coli
50S ribosomal protein L4 BF, DF, FF, HF, JF 198 Escherichia coli
50S ribosomal protein L5 BG, DG, FG, HG, JG 178 Escherichia coli
50S ribosomal protein L6 BH, DH, FH, HH, JH 177 Escherichia coli
50S ribosomal protein L9 BI, DI, FI, HI, JI 52 Escherichia coli
50S ribosomal protein L11 BJ, DJ, FJ, HJ, JJ 143 Escherichia coli
50S ribosomal protein L13 BK, DK, FK, HK, JK 143 Escherichia coli
50S ribosomal protein L14 BL, DL, FL, HL, JL 132 Escherichia coli
50S ribosomal protein L15 BM, DM, FM, HM, JM 141 Escherichia coli
50S ribosomal protein L16 BN, DN, FN, HN, JN 124 Escherichia coli
50S ribosomal protein L17 BO, DO, FO, HO, JO 114 Escherichia coli
50S ribosomal protein L18 BP, DP, FP, HP, JP 111 Escherichia coli
50S ribosomal protein L19 BQ, DQ, FQ, HQ, JQ 125 Escherichia coli
50S ribosomal protein L20 BR, DR, FR, HR, JR 117 Escherichia coli
50S ribosomal protein L21 BS, DS, FS, HS, JS 100 Escherichia coli
50S ribosomal protein L22 BT, DT, FT, HT, JT 130 Escherichia coli
50S ribosomal protein L23 BU, DU, FU, HU, JU 93 Escherichia coli
50S ribosomal protein L24 BV, DV, FV, HV, JV 113 Escherichia coli
general stress protein Ctc BW, DW, FW, HW, JW 173 Escherichia coli
50S ribosomal protein L27 BX, DX, FX, HX, JX 86 Escherichia coli
50S ribosomal protein L29 BY, DY, FY, HY, JY 65 Escherichia coli
50S ribosomal protein L30 BZ, DZ, FZ, HZ, JZ 55 Escherichia coli
50S ribosomal protein L31 B1, D1, F1, H1, J1 73 Escherichia coli
50S ribosomal protein L32 B2, D2, F2, H2, J2 58 Escherichia coli
50S ribosomal protein L33 B3, D3, F3, H3, J3 53 Escherichia coli
50S ribosomal protein L34 B4, D4, F4, H4, J4 46 Escherichia coli
50S ribosomal protein L35 B5, D5, F5, H5, J5 63 Escherichia coli
50S ribosomal protein L36 B6, D6, F6, H6, J6 35 Escherichia coli
50S ribosomal protein L1P B7, D7, F7, H7, J7 217 Escherichia coli
Macromolecule Entities
Molecule Chains Length Organism Details
16S ribosomal RNA AA, CA, EA, GA, IA 1526 Escherichia coli
23S RIBOSOMAL RNA BB, DB, FB, HB, JB 2825 Escherichia coli
5S RIBOSOMAL RNA BA, DA, FA, HA, JA 119 Escherichia coli

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
B7, D7, F7, H7, J7 L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 11.5 Å
  • R-Value Free: 0.401
  • R-Value Work: 0.395
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 687.90 α = 90.00
b = 687.90 β = 90.00
c = 1933.30 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2004-10-06
  • Released Date: 2014-07-09
  • Deposition author(s): Vila-Sanjurjo, A., Schuwirth, B.S., Hau, C.W., Cate, J.H.
  • Previous versions: 1VOQ 1VOR 1VOS 1VOU 1VOV 1VOW 1VOX 1VOY 1VOZ 1VP0

Revision History

  • 2014-12-10
    Type: Other