4UJE

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.9 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4UJE

Classification: RIBOSOME

Total Structure Weight: 3858798.25


Macromolecule Entities
Molecule Chains Length Organism Details
40S RIBOSOMAL PROTEIN SA BA 295 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S3A BB 264 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S2 BC 293 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S3 BD 243 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1 BE 263 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S5 BF 204 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S6 BG 249 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S7 BH 194 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S8 BI 208 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S9 BJ 194 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S10 BK 165 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S11 BL 158 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S12 BM 132 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S13 BN 151 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S14 BO 151 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S15 BP 145 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S16 BQ 146 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S17 BR 135 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S18 BS 152 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S19 BT 145 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S20 BU 119 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S21 BV 83 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S15A BW 130 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S23 BX 143 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S24 BY 133 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S25 BZ 125 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S26 Ba 115 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S27 Bb 84 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S28 Bc 69 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S29 Bd 56 Oryctolagus cuniculus
40S RIBOSOMAL PROTEIN S30 Be 59 Oryctolagus cuniculus
UBIQUITIN-40S RIBOSOMAL PROTEIN S27A Bf 156 Oryctolagus cuniculus
GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 Bg 317 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L8 CA 257 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L3 CB 403 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L4 CC 427 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L5 CD 297 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L6 CE 288 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L7 CF 248 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L7A CG 266 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L9 CH 192 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L10 CI 214 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L11 CJ 178 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L13 CL 211 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L14 CM 215 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L15 CN 204 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L13A CO 203 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L17 CP 184 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L18 CQ 188 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L19 CR 196 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L18A CS 176 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L21 CT 160 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L22 CU 128 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L23 CV 140 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L24 CW 157 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L23A CX 156 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L26 CY 145 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L27 CZ 136 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L27A Ca 148 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L29 Cb 159 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L30 Cc 115 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L31 Cd 125 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L32 Ce 135 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L35A Cf 110 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L34 Cg 117 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L35 Ch 123 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L36 Ci 105 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L37 Cj 97 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L38 Ck 70 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L39 Cl 51 Oryctolagus cuniculus
UBIQUITIN-60S RIBOSOMAL PROTEIN L40 Cm 128 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L41 Cn 25 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L36A Co 106 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L37A Cp 92 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L28 Ct 137 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN L10A Cu 210 Oryctolagus cuniculus
Macromolecule Entities
Molecule Chains Length Organism Details
TRNA-LYS AV 76 Oryctolagus cuniculus FOR MODELING E.COLI TRNAPHE (CHAIN C, PDB ID CODE 3I8G) WAS USED.
TRNA-PHE AW 76 Bos taurus FOR MODELING E.COLI TRNAPHE (CHAIN D, PDB ID CODE 3I8G) WAS USED.
Messenger RNA AX 28 Escherichia coli FOR MODELING MRNA (CHAIN 1, PDB ID CODE 3I8G) WAS USED.
18S Ribosomal RNA B1 1869 Oryctolagus cuniculus
28S Ribosomal RNA A2 5025 Oryctolagus cuniculus
5.8S Ribosomal RNA A3 194 Oryctolagus cuniculus
5S Ribosomal RNA A4 121 Oryctolagus cuniculus

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MIA
Query on MIA
AW RNA LINKING C16 H26 N5 O7 P S A

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.9 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2014-04-05
  • Released Date: 2014-07-16
  • Deposition author(s): Budkevich, T.V., Giesebrecht, J., Behrmann, E., Loerke, J., Ramrath, D.J.F., Mielke, T., Ismer, J., Hildebrand, P., Tung, C.-S., Nierhaus, K.H., Sanbonmatsu, K.Y., Spahn, C.M.T.
  • This entry supercedes: 4CXB 4CXC 4CXD 4CXE

Revision History

  • Version 1_0: 2014-07-16

    Type: Initial release

  • Version 1_1: 2016-06-08

    Type: Other, Source and taxonomy

  • Version 1_2: 2017-07-05

    Type: Data collection, Structure summary

  • Version 2_0: 2017-08-30

    Type: Advisory, Atomic model, Data collection, Derived calculations, Refinement description