4UD8

AtBBE15


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 4UD8

Classification: OXIDOREDUCTASE

Total Structure Weight: 123233.11

Macromolecule Entities
Molecule Chains Length Organism Details
FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN A, B 532 Arabidopsis thaliana Details: THE FAD COFACTOR IS BICOVALENTLY LINKED TO THE PEPTIDE CHAIN VIA A COVALENT BOND OF HIS115 TO 8-ALPHA- METHYL GROUP AND CYS179 TO THE 6-POSITION OF THE ISOALLOXAZINE RING.
Gene Name(s): MEE23 At2g34790
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PE5
Query on PE5

A, B 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
POLYETHYLENE GLYCOL PEG400, (Synonym)
C18 H38 O9
CUDPPTPIUWYGFI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.184
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.60 α = 90.00
b = 94.74 β = 90.00
c = 188.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-09
  • Released Date: 2015-06-10
  • Deposition author(s): Daniel, B., Steiner, B., Pavkov-Keller, T., Dordic, A., Gutmann, A., Sensen, C.W., Nidetzky, B., van der Graaff, E., Wallner, S., Gruber, K., Macheroux, P.

Revision History

  • Version 1_0: 2015-06-10

    Type: Initial release

  • Version 1_1: 2015-08-12

    Type: Database references