4U5W

Crystal Structure of HIV-1 Nef-SF2 Core Domain in Complex with the Src Family Kinase Hck SH3-SH2 Tandem Regulatory Domains


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 4U5W

Classification: Viral protein / Transferase

Total Structure Weight: 77786.27

Macromolecule Entities
Molecule Chains Length Organism Details
Protein Nef A, C 149 Human immunodeficiency virus 1 Fragment: UNP residues 62-209
Gene Name(s): nef
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tyrosine-protein kinase HCK B, D 180 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SH3-SH2 domain, UNP residues 72-242
Gene Name(s): HCK Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B, C, D IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.169
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 56.49 α = 112.28
b = 57.26 β = 96.09
c = 72.11 γ = 106.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-07-25
  • Released Date: 2014-08-20
  • Deposition author(s): Alvarado, J.J., Yeh, J.I., Smithgall, T.E.

Revision History

  • Version 1_0: 2014-08-20

    Type: Initial release

  • Version 1_1: 2014-08-27

    Type: Database references

  • Version 1_2: 2014-10-22

    Type: Database references

  • Version 1_3: 2017-09-13

    Type: Advisory, Author supporting evidence, Database references, Derived calculations, Other, Source and taxonomy