4TMA

Crystal structure of gyrase bound to its inhibitor YacG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 4TMA

Classification: ISOMERASE / ISOMERASE INHIBITOR

Total Structure Weight: 454821.13

Macromolecule Entities
Molecule Chains Length Organism Details
DNA gyrase subunit A A, C, E, G 525 Escherichia coli EC#: 5.99.1.3 IUBMB
Fragment: UNP residues 1-525
DNA gyrase subunit B B, D, F, H 417 Escherichia coli EC#: 5.99.1.3 IUBMB
Fragment: UNP residues 388-801
Mutation: F458Y
DNA gyrase inhibitor YacG I, J, K, L 65 Escherichia coli Gene Name(s): yacG b0101 JW5008
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B, E, I, J, K, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.243
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 107.21 α = 90.00
b = 114.46 β = 90.00
c = 462.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-31
  • Released Date: 2014-07-23
  • Deposition author(s): Vos, S.M., Lyubimov, A.Y., Hershey, D.M., Schoeffler, A.J., Berger, J.M.

Revision History

  • 2017-09-06
    Type: Advisory, Author supporting evidence, Database references, Derived calculations, Other, Source and taxonomy