4RWV

Crystal structure of PIP3 bound human nuclear receptor LRH-1 (Liver Receptor Homolog 1, NR5A2) in complex with a co-regulator DAX-1 (NR0B1) peptide at 1.86 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 4RWV

Classification: TRANSCRIPTION

Total Structure Weight: 31868.46

Macromolecule Entities
Molecule Chains Length Organism Details
Nuclear receptor subfamily 5 group A member 2 A 249 Homo sapiens Fragment: LIGAND BINDING DOMAIN (UNP residues 294-551)
Gene Name(s): NR5A2 Gene View B1F CPF FTF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear receptor DAX1 B 15 Homo sapiens Fragment: UNP residues 140-154
Gene Name(s): NR0B1 Gene View AHC DAX1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PIZ
Query on PIZ

A (2S)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-dihydroxy- 3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane- 1,2-diyl dihexadecanoate
4, (Synonym)
C41 H82 O22 P4
ZSZXYWFCIKKZBT-XMZWCAJNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

B 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 71.62 α = 90.00
b = 50.19 β = 109.22
c = 93.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-05
  • Released Date: 2015-01-21
  • Deposition author(s): Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL)

Revision History

  • Version 1_0: 2015-01-21

    Type: Initial release