4RUW

The crystal structure of endonuclease/exonuclease/phosphatase from Beutenbergia cavernae DSM 12333

Structural Biology Knowledgebase: 4RUW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.148
  • R-Value Work: 0.138

Literature

Macromolecules
Sequence Display for 4RUW

Classification: HYDROLASE

Total Structure Weight: 46641.07

Macromolecule Entities
Molecule Chains Length Organism Details
Endonuclease/exonuclease/phosphatase A 440 Beutenbergia cavernae EC#: 3.1.4 IUBMB
Gene Name(s): Bcav_3678
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.148
  • R-Value Work: 0.138
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 122.00 α = 90.00
b = 81.12 β = 95.91
c = 46.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-11-23
  • Released Date: 2014-12-24
  • Deposition author(s): Wu, R., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release