4R40

Crystal Structure of TolB/Pal complex from Yersinia pestis.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 4R40

Classification: PROTEIN TRANSPORT

Total Structure Weight: 119954.18

Macromolecule Entities
Molecule Chains Length Organism Details
Protein TolB A, C 411 Yersinia pestis Gene Name(s): tolB YPO1124 y3055 YP_1032
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptidoglycan-associated lipoprotein B, D 141 Yersinia pestis Gene Name(s): pal excC y3054 YP_1031 YPO1125
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, B FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.170
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 47.39 α = 90.00
b = 175.25 β = 89.83
c = 66.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-08-18
  • Released Date: 2014-09-03
  • Deposition author(s): Maltseva, N., Kim, Y., Osipiuk, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release