4QJG

Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with penicillin V

Structural Biology Knowledgebase: 4QJG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 4QJG

Classification: transferase

Total Structure Weight: 102003.53

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidoglycan glycosyltransferase A, B 482 Atopobium parvulum EC#: 2.4.1.129 IUBMB
Fragment: UNP residues 505-954
Gene Name(s): Apar_1344
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
35P
Query on 35P

A, B (2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenoxyacetyl)amino]ethyl}- 1,3-thiazolidine-4-carboxylic acid
OPEN FORM - PENICILLIN V (Synonym)
C16 H20 N2 O5 S
OQVOJWZOUWGSDX-KWCYVHTRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 66.72 α = 90.00
b = 70.02 β = 96.93
c = 114.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-06-03
  • Released Date: 2014-07-09
  • Deposition author(s): Filippova, E.V., Minasov, G., Kiryukhina, O., Clancy, S., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2015-08-12
    Type: Non-polymer description | Details: --
  • 2014-08-13
    Type: Citation | Details: --
  • 2014-08-13
    Type: Entry authorship | Details: --