4QGN

Human acireductone dioxygenase with iron ion and L-methionine in active center


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 4QGN

Classification: OXIDOREDUCTASE

Total Structure Weight: 22566.85

Macromolecule Entities
Molecule Chains Length Organism Details
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase A 183 Homo sapiens EC#: 1.13.11.54 IUBMB
Gene Name(s): ADI1 Gene View MTCBP1 HMFT1638
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MSE
Query on MSE

A SELENOMETHIONINE
C5 H11 N O2 Se
RJFAYQIBOAGBLC-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.178
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 105.19 α = 90.00
b = 105.19 β = 90.00
c = 40.82 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-23
  • Released Date: 2015-05-27
  • Deposition author(s): Milaczewska, A.M., Chruszcz, M., Petkowski, J.J., Niedzialkowska, E., Minor, W., Borowski, T.

Revision History

  • Version 1_0: 2015-05-27

    Type: Initial release