4PR6

A Second Look at the HDV Ribozyme Structure and Dynamics.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 4PR6

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 57961.83


Macromolecule Entities
Molecule Chains Length Organism Details
U1 small nuclear ribonucleoprotein A A 95 Homo sapiens Fragment: RNA BINDING DOMAIN, UNP residues 101-244
Mutation: Y31H, Q36R
Gene Name(s): SNRPA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
HDV RIBOZYME SELF-CLEAVED B 144 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.199
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 109.35 α = 90.00
b = 109.35 β = 90.00
c = 190.68 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-03-05
  • Released Date: 2014-10-29
  • Deposition author(s): Kapral, G.J., Jain, S., Noeske, J., Doudna, J.A., Richardson, D.C., Richardson, J.S.
  • Previous versions: 1CX0

Revision History

  • 2014-11-26
    Type: Database references