4P7C

Crystal structure of putative methyltransferase from Pseudomonas syringae pv. tomato

Structural Biology Knowledgebase: 4P7C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 4P7C

Classification: TRANSFERASE

Total Structure Weight: 74219.66

Macromolecule Entities
Molecule Chains Length Organism Details
tRNA (mo5U34)-methyltransferase A, B 322 Pseudomonas syringae group genomosp. 3 EC#: 2.1.1 IUBMB
Gene Name(s): cmoB PSPTO_4213
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BTB
Query on BTB

A 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- PROPANE-1,3-DIOL
BIS-TRIS BUFFER (Synonym)
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.152
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.08 α = 90.00
b = 88.73 β = 90.00
c = 128.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-03-26
  • Released Date: 2014-04-09
  • Deposition author(s): Chang, C., Mack, J., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2014-08-06
    Type: Biological assembly | Details: Biological assembly
  • 2014-04-16
    Type: Entry title | Details: Entry title