4OPM

Crystal structure of a putative lipase (lip1) from Acinetobacter baumannii AYE at 1.70 A resolution

Structural Biology Knowledgebase: 4OPM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 4OPM

Classification: HYDROLASE

Total Structure Weight: 73570.21

Macromolecule Entities
Molecule Chains Length Organism Details
Lipase A, B 306 Acinetobacter baumannii EC#: 3.1.1.3 IUBMB
Fragment: UNP residues 26-330
Gene Name(s): lip1 ABAYE2810
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
15P
Query on 15P

A POLYETHYLENE GLYCOL (N=34)
PEG 1500 (Synonym)
C69 H140 O35
VUYXVWGKCKTUMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PE4
Query on PE4

A, B 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]- ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
POLYETHYLENE GLYCOL PEG4000 (Synonym)
C16 H34 O8
PJWQOENWHPEPKI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 100.40 α = 90.00
b = 66.90 β = 95.58
c = 110.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-02-05
  • Released Date: 2014-02-19
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

No revisions since initial release