4OK9

Crystal structure of the single-stranded RNA binding protein HutP from Geobacillus thermodenitrificans

Structural Biology Knowledgebase: 4OK9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4OK9

Classification: RNA BINDING PROTEIN

Total Structure Weight: 33063.81

Macromolecule Entities
Molecule Chains Length Organism Details
Hut operon positive regulatory protein A, B 149 Geobacillus thermodenitrificans Fragment: HutP
Gene Name(s): hutP GTNG_0361
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HIS
Query on HIS

A, B HISTIDINE
C6 H10 N3 O2
HNDVDQJCIGZPNO-YFKPBYRVSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.176
  • Space Group: P 63
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.81 α = 90.00
b = 90.81 β = 90.00
c = 76.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-22
  • Released Date: 2014-03-19
  • Deposition author(s): Thiruselvam, V., Ponnuswamy, M.N., Kumarevel, T.S.

Revision History

  • 2014-12-17
    Type: Citation | Details: Citation update