4OI4

Protein complex of Clp1 bound to ATP and Mg2+ with Pcf11deltaN454deltaC563 of S. cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 4OI4

Classification: TRANSCRIPTION

Total Structure Weight: 142437.16

Macromolecule Entities
Molecule Chains Length Organism Details
mRNA cleavage and polyadenylation factor CLP1 A, C 453 Saccharomyces cerevisiae EC#: 2.7.1.78 IUBMB
Gene Name(s): CLP1 Gene View YOR250C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein PCF11 B, D, U 115 Saccharomyces cerevisiae Fragment: Clp1 interaction domain (UNP residues 454-563, SEE REMARK 999)
Gene Name(s): PCF11 Gene View YDR228C YD9934.13C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, C ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.187
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 89.64 α = 90.00
b = 95.77 β = 90.00
c = 181.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-18
  • Released Date: 2014-05-14
  • Deposition author(s): Dikfidan, A., Loll, B., Zeymer, C., Clausen, T., Meinhart, A.

Revision History

  • 2015-01-14
    Type: Entry title | Details: Corrected entry title
  • 2014-07-02
    Type: Citation | Details: Citation update