4OHX

C. Elegans Clp1 bound to ADP and Mg2+ (RNA released state)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 4OHX

Classification: RNA BINDING PROTEIN

Total Structure Weight: 48802.45

Macromolecule Entities
Molecule Chains Length Organism Details
Protein clpf-1 A 431 Caenorhabditis elegans Gene Name(s): clpf-1 F59A2.4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2PE
Query on 2PE

A NONAETHYLENE GLYCOL
C18 H38 O10
YZUUTMGDONTGTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.185
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 98.91 α = 90.00
b = 98.91 β = 90.00
c = 42.81 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-18
  • Released Date: 2014-05-14
  • Deposition author(s): Dikfidan, A., Loll, B., Zeymer, C., Clausen, T., Meinhart, A.

Revision History

  • Version 1_0: 2014-05-14

    Type: Initial release

  • Version 1_1: 2014-07-02

    Type: Database references

  • Version 1_2: 2015-01-21

    Type: Structure summary