4OBU

Ruminococcus gnavus tryptophan decarboxylase RUMGNA_01526 (apo)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 4OBU

Classification: LYASE

Total Structure Weight: 442174.09

Macromolecule Entities
Molecule Chains Length Organism Details
Pyridoxal-dependent decarboxylase domain protein A, B, C..., E, F, G, H, UA, B, C, E, F, G, H, U 490 [ruminococcus] gnavus Gene Name(s): RUMGNA_01526
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B, C, E, F, G, H, U PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.231
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 58.63 α = 72.85
b = 145.77 β = 88.84
c = 165.07 γ = 88.30

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-07
  • Released Date: 2014-10-29
  • Deposition author(s): Van Benschoten, A.H., Fraser, J.S.

Revision History

  • Version 1_0: 2014-10-29

    Type: Initial release