4O1S

Crystal structure of TvoVMA intein

Structural Biology Knowledgebase: 4O1S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4O1S

Classification: splicing

Total Structure Weight: 38193.45

Macromolecule Entities
Molecule Chains Length Organism Details
V-type ATP synthase alpha chain A, B 170 Thermoplasma volcanium EC#: 3.6.3.14 IUBMB
Mutation: C5A, ΔE357, ΔS358, ΔE359, ΔA360, ΔR361, ΔD362, ΔC363, ΔG364, ΔM365, ΔS366, ΔE367, ΔE368, ΔC369, ΔV370, ΔM371, ΔE372, ΔE374, ΔV375, ΔY376, ΔT377, ΔL379
Gene Name(s): atpA TV0051 TVG0054274

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A, B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180
  • Space Group: P 63
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 154.44 α = 90.00
b = 154.44 β = 90.00
c = 48.98 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-16
  • Released Date: 2014-03-19
  • Deposition author(s): Aranko, A.S., Oeemig, J.S., Zhou, D., Kajander, T., Wlodawer, A., Iwai, H.

Revision History

  • 2014-04-16
    Type: Citation | Details: Citation update