4NX4

Re-refinement of CAP-1 HIV-CA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.145

Literature

Macromolecules
Sequence Display for 4NX4

Classification: VIRAL PROTEIN

Total Structure Weight: 16752.76

Macromolecule Entities
Molecule Chains Length Organism Details
Gag-Pol polyprotein C 146 Human immunodeficiency virus 1 Fragment: HIV-1 CAPSID (UNP residues 133-278)
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
JPR
Query on JPR

C 1-(3-chloro-4-methylphenyl)-3-{2-[({5-[(dimethylamino)methyl]- 2-furyl}methyl)thio]ethyl}urea
C18 H24 Cl N3 O2 S
WEYNBWVKOYCCQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.145
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 42.19 α = 90.00
b = 62.78 β = 90.00
c = 106.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-08
  • Released Date: 2014-02-26
  • Deposition author(s): Lang, P.T., Holton, J.M., Fraser, J.S., Alber, T.

Revision History

No revisions since initial release