4NVN

Predicting protein conformational response in prospective ligand discovery


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.142

Literature

Macromolecules
Sequence Display for 4NVN

Classification: OXIDOREDUCTASE

Total Structure Weight: 34028.53

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c peroxidase B 289 Saccharomyces cerevisiae Fragment: UNP RESIDUES 72-362
Mutation: P190G, W191G, ΔG260, ΔA261
Gene Name(s): SCRG_04081
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2O1
Query on 2O1

B 2,3-dihydrobenzo[h][1,6]naphthyridin-4(1H)- one
C12 H10 N2 O
PTMYWDHBZAMKMN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.142
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.00 α = 90.00
b = 73.44 β = 90.00
c = 104.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-05
  • Released Date: 2013-12-25
  • Deposition author(s): Fischer, M., Fraser, J.S.

Revision History

  • 2015-06-24
    Type: Citation | Details: Citation update