4NRD

Crystal structure of a putative GDSL-like lipase (BACOVA_04955) from Bacteroides ovatus ATCC 8483 at 2.10 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 4NRD

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 161646.95

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A, B, C..., D, E, FA, B, C, D, E, F 227 Bacteroides ovatus Gene Name(s): BACOVA_04955
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

C, D, E 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 70.94 α = 88.78
b = 70.89 β = 84.70
c = 76.62 γ = 60.13

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-26
  • Released Date: 2013-12-25
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2014-12-24
    Type: Structure summary