4NNB

Binary complex of ObcA with oxaloacetate

Structural Biology Knowledgebase: 4NNB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4NNB

Classification: LYASE

Total Structure Weight: 59545.67

Macromolecule Entities
Molecule Chains Length Organism Details
OBCA, Oxalate Biosynthetic Component A A 542 Burkholderia glumae EC#: 4.1.3 IUBMB
Gene Name(s): bglu_2g18790

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OAA
Query on OAA

A OXALOACETATE ION
C4 H3 O5
KHPXUQMNIQBQEV-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.210
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 177.01 α = 90.00
b = 177.01 β = 90.00
c = 47.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-17
  • Released Date: 2014-03-19
  • Deposition author(s): Oh, J.T., Goo, E., Hwang, I., Rhee, S.

Revision History

  • 2014-05-07
    Type: Citation | Details: Citation update
  • 2014-04-23
    Type: Citation | Details: Citation update