4NLD

Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase complex with BMS-791325 also known as (1aR,12bS)-8-cyclohexyl-n-(dimethylsulfamoyl)-11-methoxy-1a-{[(1R,5S)-3-methyl-3,8-diazabicyclo[3.2.1]oct-8-yl]carbonyl}-1,1a,2,12b-tetrahydrocyclopropa[d]indolo[2,1-a][2]benzazepine-5-carboxamide and 2-(4-fluorophenyl)-n-methyl-6-[(methylsulfonyl)amino]-5-(propan-2-yloxy)-1-benzofuran-3-carboxamide

Structural Biology Knowledgebase: 4NLD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4NLD

Classification: transferase / transferase INHIBITOR

Total Structure Weight: 66011.36

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-directed RNA polymerase A 574 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: UNP Residues 2420-2992
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2N7
Query on 2N7

A (1aR,12bS)-8-cyclohexyl-N-(dimethylsulfamoyl)- 11-methoxy-1a-{[(1R,5S)-3-methyl-3,8-diazabicyclo[3.2.1]oct- 8-yl]carbonyl}-1,1a,2,12b-tetrahydrocyclopropa[d]indolo[2,1- a][2]benzazepine-5-carboxamide
C36 H45 N5 O5 S
ZTTKEBYSXUCBSE-QDFUAKMASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2N5
Query on 2N5

A 2-(4-fluorophenyl)-N-methyl-6-[(methylsulfonyl)amino]- 5-(propan-2-yloxy)-1-benzofuran-3-carboxamide
C20 H21 F N2 O5 S
VBRUONUESYTIDA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.213
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.00 α = 90.00
b = 120.60 β = 90.00
c = 201.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-14
  • Released Date: 2014-03-19
  • Deposition author(s): Sheriff, S.

Revision History

  • 2014-03-26
    Type: Citation | Details: Citation update