4NEO

Structure of BlmI, a type-II acyl-carrier-protein from Streptomyces verticillus involved in bleomycin biosynthesis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 4NEO

Classification: LIGASE

Total Structure Weight: 10549.53

Macromolecule Entities
Molecule Chains Length Organism Details
Peptide synthetase NRPS type II-PCP A 93 Streptomyces verticillus Gene Name(s): blmI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG0
Query on PG0

A 2-(2-METHOXYETHOXY)ETHANOL
PEG 6000 (Synonym)
C5 H12 O3
SBASXUCJHJRPEV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET
MLY
Query on MLY
A L-PEPTIDE LINKING C8 H18 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.180
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 73.44 α = 90.00
b = 73.44 β = 90.00
c = 43.33 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-29
  • Released Date: 2014-01-29
  • Deposition author(s): Cuff, M.E., Bigelow, L., Bearden, J., Babnigg, G., Bruno, C.J.P., Bingman, C., Yennamalli, R., Lohman, J., Ma, M., Shen, B., Phillips Jr., G.N., Joachimiak, A., Enzyme Discovery for Natural Product Biosynthesis (NatPro), Midwest Center for Structural Genomics (MCSG)
  • Previous versions: 4I4D

Revision History

  • Version 1_0: 2014-01-29

    Type: Initial release

  • Version 1_1: 2014-02-19

    Type: Structure summary

  • Version 1_2: 2014-03-19

    Type: Database references

  • Version 1_3: 2014-09-03

    Type: Database references