Crystal structure of apo 3-nitro-tyrosine tRNA synthetase (5B) in the open form
4ND6
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 36166.29
    Molecule: Tyrosine-tRNA ligase
    Polymer: 1 Type: protein Length: 314
    Chains: A
    EC#: 6.1.1.1   
    Mutation: Y32H, H70C, D158S, I159A, L162R
    Organism: Methanocaldococcus jannaschii DSM 2661
    Gene Names: tyrS MJ0389
    UniProtKB: Protein Feature View | Search PDB | Q57834  
     
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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Methanocaldococcus jannaschii   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4ND7    
    4NDA    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
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Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Cooley, R.B.,  Driggers, C.M.,  Karplus, P.A.,  Mehl, R.A.

    Deposition:   2013-10-25
    Release:   2014-03-19
    Last Modified (REVDAT):   2014-04-16
     
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    2014-04-16
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.201 (obs.)
    R-Free: 0.249
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 101.14 α = 90.00 
    b = 101.14 β = 90.00 
    c = 73.29 γ = 90.00