Crystal Structure of Human ATG12~ATG5-ATG16N in complex with a fragment of ATG3
4NAW
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  •   Molecular Description Hide
    Classification: Protein Transport/ligase
    Structure Weight: 206156.28
    Molecule: Ubiquitin-like protein ATG12
    Polymer: 1 Type: protein Length: 91
    Chains: A, E, I, M
    Fragment: UNP residues 52-140
    Organism: Homo sapiens
    Gene Names: Gene View for ATG12 APG12 APG12L
    UniProtKB: Protein Feature View | Search PDB | O94817  
    Molecule: Autophagy protein 5
    Polymer: 2 Type: protein Length: 275
    Chains: B, F, J, N
    Organism: Homo sapiens
    Gene Names: Gene View for ATG5 APG5L ASP
    UniProtKB: Protein Feature View | Search PDB | Q9H1Y0  
    Molecule: Autophagy-related protein 16-1
    Polymer: 3 Type: protein Length: 36
    Chains: C, G, K, O
    Fragment: UNP residues 11-43
    Organism: Homo sapiens
    Gene Names: Gene View for ATG16L1 APG16L UNQ9393/PRO34307
    UniProtKB: Protein Feature View | Search PDB | Q676U5  
    Molecule: Ubiquitin-like-conjugating enzyme ATG3
    Polymer: 4 Type: protein Length: 34
    Chains: D, H, L, P
    EC#: 6.3.2   
    Fragment: UNP residues 140-170
    Organism: Homo sapiens
    Gene Names: Gene View for ATG3 APG3 APG3L
    UniProtKB: Protein Feature View | Search PDB | Q9NT62  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4GDK   A crystal structure of the ATG12~ATG5-ATG16N complex without ATG3 
    4GDL   A crystal structure of the ATG12~ATG5-ATG16N complex without ATG3 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NA
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    NA Na
    SODIUM ION
    SO4
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    SO4 O4 S
    SULFATE ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Metlagel, Z.,  Otomo, C.,  Takaesu, G.,  Otomo, T.

    Deposition:   2013-10-22
    Release:   2013-11-06
    Last Modified (REVDAT):   2013-12-18
     
  •   Revision History    Hide
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    2013-12-18
    Citation
    2013-11-27
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.19
    R-Value: 0.172 (obs.)
    R-Free: 0.215
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.58 α = 90.00 
    b = 120.10 β = 90.00 
    c = 189.47 γ = 90.00