4N98

E. coli sliding clamp in complex with 4'-fluorobiphenyl-4-carboxylic acid

Structural Biology Knowledgebase: 4N98 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.256

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4N98

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 82086.30

Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase III subunit beta A, B 366 Escherichia coli EC#: 2.7.7.7 IUBMB
Gene Name(s): dnaN b3701 JW3678
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4FC
Query on 4FC

A 4'-FLUORO-1,1'-BIPHENYL-4-CARBOXYLIC ACID
C13 H9 F O2
LXWNTLBMNCXRQN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
4FC N/A in BindingDB
Ki: 280000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.256
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.90 α = 90.00
b = 67.16 β = 114.11
c = 81.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-19
  • Released Date: 2013-11-06
  • Deposition author(s): Yin, Z., Oakley, A.J.

Revision History

  • 2014-04-09
    Type: Citation | Details: Citation update
  • 2014-04-02
    Type: Citation | Details: Citation update