4N95

E. coli sliding clamp in complex with 5-chloroindoline-2,3-dione

Structural Biology Knowledgebase: 4N95 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4N95

Classification: TRANSFERASE

Total Structure Weight: 82708.19

Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase III subunit beta A, B 366 Escherichia coli EC#: 2.7.7.7 IUBMB
Gene Name(s): dnaN b3701 JW3678

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2HQ
Query on 2HQ

A 5-chloro-1H-indole-2,3-dione
C8 H4 Cl N O2
XHDJYQWGFIBCEP-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.186
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.72 α = 73.88
b = 64.04 β = 82.29
c = 71.70 γ = 84.03

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-19
  • Released Date: 2013-11-06
  • Deposition author(s): Yin, Z., Oakley, A.J.

Revision History

  • 2014-04-09
    Type: Citation | Details: Citation update
  • 2014-04-02
    Type: Citation | Details: Citation update