4N94

E. coli sliding clamp in complex with 3,4-difluorobenzamide

Structural Biology Knowledgebase: 4N94 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.249

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4N94

Classification: TRANSFERASE

Total Structure Weight: 82090.98

Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase III subunit beta A, B 366 Escherichia coli EC#: 2.7.7.7 IUBMB
Gene Name(s): dnaN b3701 JW3678

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2HO
Query on 2HO

A 3,4-difluorobenzamide
C7 H5 F2 N O
CMWOHNIHUBDEAG-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PEG
Query on PEG

B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PG4
Query on PG4

B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.249
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.74 α = 74.01
b = 64.51 β = 83.21
c = 71.72 γ = 84.54

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-19
  • Released Date: 2013-11-06
  • Deposition author(s): Yin, Z., Oakley, A.J.

Revision History

  • 2014-04-09
    Type: Citation | Details: Citation update
  • 2014-04-02
    Type: Citation | Details: Citation update