4N6Z

Pim1 Complexed with a pyridylcarboxamide

Structural Biology Knowledgebase: 4N6Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.160

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4N6Z

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 38186.70

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 328 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 93-404
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2HW
Query on 2HW

A 3-amino-N-{4-[(3S)-3-aminopiperidin-1-yl]pyridin- 3-yl}pyrazine-2-carboxamide
C15 H19 N7 O
PKUDLMDWOHMCHC-JTQLQIEISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
2HW Ki: 16 nM (97) BindingDB

Ki: 16 nM  BindingMOAD
Ki: 16 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.160
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.31 α = 90.00
b = 97.31 β = 90.00
c = 80.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-14
  • Released Date: 2013-11-06
  • Deposition author(s): Bellamacina, C.R., Le, V., Shu, W., Burger, M.T., Bussiere, D.

Revision History

  • 2014-07-02
    Type: Citation | Details: Citation update