4MY0

Crystal Structure of GCN5-related N-acetyltransferase from Kribbella flavida

Structural Biology Knowledgebase: 4MY0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 4MY0

Classification: TRANSFERASE

Total Structure Weight: 260976.75

Macromolecule Entities
Molecule Chains Length Organism Details
GCN5-related N-acetyltransferase A, B, C..., D, E, FA, B, C, D, E, F 392 Kribbella flavida Mutation: M1V
Gene Name(s): Kfla_4406
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AC8
Query on AC8

C [(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)- 3,4-bis(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)- 3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3- [(2-sulfanylethyl)amino]propyl}amino)butyl dihydrogen diphosphate
C21 H37 N7 O19 P4 S
SAXULFDJRFDTDN-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACO
Query on ACO

A, B, D, E, F ACETYL COENZYME *A
C23 H38 N7 O17 P3 S
ZSLZBFCDCINBPY-ZSJPKINUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A, B, C, D, E, F 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.166
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.14 α = 90.00
b = 166.52 β = 90.00
c = 183.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-26
  • Released Date: 2013-11-06
  • Deposition author(s): Kim, Y., Mack, J., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release