4MPY

1.85 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) from Staphylococcus aureus (IDP00699) in complex with NAD+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.126

Literature

Macromolecules
Sequence Display for 4MPY

Classification: OXIDOREDUCTASE

Total Structure Weight: 465780.88

Macromolecule Entities
Molecule Chains Length Organism Details
Betaine aldehyde dehydrogenase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 520 Staphylococcus aureus EC#: 1.2.1.8 IUBMB
Gene Name(s): betB SACOL2628
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D, E, F, G, H NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D, E, F, G, H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CME
Query on CME
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C5 H11 N O3 S2 CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.126
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 99.87 α = 90.00
b = 159.15 β = 94.79
c = 122.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-14
  • Released Date: 2013-10-09
  • Deposition author(s): Halavaty, A.S., Minasov, G., Shuvalova, L., Winsor, J., Peterson, S.N., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
  • Previous versions: 3FG0

Revision History

  • 2015-04-01
    Type: Database references
  • 2015-05-13
    Type: Database references