4MPT

Crystal Structure of Periplasmic binding Protein Type 1 from Bordetella pertussis Tohama I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 4MPT

Classification: TRANSPORT PROTEIN

Total Structure Weight: 82689.71

Macromolecule Entities
Molecule Chains Length Organism Details
Putative leu/ile/val-binding protein A, B 380 Bordetella pertussis Fragment: delta-N21
Gene Name(s): BP0622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACY
Query on ACY

A, B ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.160
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 86.57 α = 90.00
b = 86.57 β = 90.00
c = 194.05 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-13
  • Released Date: 2013-12-11
  • Deposition author(s): Kim, Y., Joachimiak, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release