4MO9

Crystal Structure of TroA-like Periplasmic Binding Protein FepB from Veillonella parvula


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 4MO9

Classification: SOLUTE-BINDING PROTEIN

Total Structure Weight: 41839.01

Macromolecule Entities
Molecule Chains Length Organism Details
Periplasmic binding protein A 369 Veillonella parvula Fragment: UNP residues 25-390
Gene Name(s): Vpar_0195
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TMO
Query on TMO

A trimethylamine oxide
C3 H9 N O
UYPYRKYUKCHHIB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.166
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 39.40 α = 90.00
b = 76.00 β = 90.00
c = 125.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-11
  • Released Date: 2013-09-25
  • Deposition author(s): Kim, Y., Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release