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unliganded BK Polyomavirus VP1 pentamer
4MJ1
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Viral Protein
    Structure Weight: 151943.74
    Molecule: VP1 capsid protein
    Polymer: 1 Type: protein Length: 275
    Chains: A, B, C, D, E
    Organism: BK polyomavirus
    UniProtKB: Protein Feature View | Search PDB | P03088  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bk polyomavirus   Taxonomy   Common Name: Bkpyv Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3BWQ  Structure of free SV40 VP1 pentamer 
    3BWR  SV40 VP1 pentamer in complex with GM1 oligosaccharide 
    3NXD  JC Polyomavirus VP1 in complex with LSTc 
    4MJ0  BK Polyomavirus VP1 in complex with GD3 oligosaccharide 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Neu, U.,  Stroh, L.J.,  Stehle, T.

    Deposition:   2013-09-03
    Release:   2013-11-06
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.162 (obs.)
    R-Free: 0.199
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 144.90 α = 90.00 
    b = 152.29 β = 90.00 
    c = 62.72 γ = 90.00