4MGT

ALKBH2 R110A cross-linked to undamaged dsDNA

Structural Biology Knowledgebase: 4MGT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.231

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4MGT

Classification: OXIDOREDUCTASE / DNA

Total Structure Weight: 31570.57


Macromolecule Entities
Molecule Chains Length Organism Details
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 A 205 Homo sapiens EC#: 1.14.11.33 IUBMB
Fragment: UNP residues 56-258
Mutation: C67S, R110A, C165S, G169C, C192S
Gene Name(s): ALKBH2 Gene View ABH2
Macromolecule Entities
Molecule Chains Length Organism Details
DNA1 B 14 synthetic
DNA2 C 13 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
2YR
Query on 2YR
C NON-POLYMER C11 H18 N3 O7 P S --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.231
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 129.10 α = 90.00
b = 129.10 β = 90.00
c = 84.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-28
  • Released Date: 2014-02-26
  • Deposition author(s): Chen, B., Gan, J., Yang, C.G.

Revision History

  • 2014-05-28
    Type: Non-polymer description | Details: --