4MFB

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 8-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)indolizine-2-carbonitrile (JLJ555), a non-nucleoside inhibitor

Structural Biology Knowledgebase: 4MFB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4MFB

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 114418.48

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 reverse transcriptase, p66 subunit A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: HIV-1 reverse transcriptase, p66 subunit (chain A)
Mutation: K172A, K173A, C280S
Gene Name(s): gag-pol
HIV-1 reverse transcriptase, p51 subunit B 428 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: HIV-1 reverse transcriptase, p51 subunit (chain B)
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
29T
Query on 29T

A 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)- yl)ethoxy]phenoxy}indolizine-2-carbonitrile
C21 H16 N4 O4
UUVBMMWJHPNLHN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.237
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 223.95 α = 90.00
b = 69.40 β = 105.87
c = 104.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-27
  • Released Date: 2013-11-06
  • Deposition author(s): Frey, K.M., Anderson, K.S.

Revision History

  • 2013-11-20
    Type: Citation | Details: Citation update