4MBS

Crystal Structure of the CCR5 Chemokine Receptor

Structural Biology Knowledgebase: 4MBS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 4MBS

Classification: SIGNALING PROTEIN

Total Structure Weight: 99757.05

Macromolecule Entities
Molecule Chains Length Organism Details
Chimera protein of C-C chemokine receptor type 5 and Rubredoxin A, B 414 Clostridium pasteurianum Homo sapiens Fragment: Rubredoxin inserted into CCR5 between residue 223 and 227
Mutation: C58Y, G163N, A233D, K303E
Gene Name(s): CCR5 Gene View CMKBR5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: CCR5 chemokine receptor with bound Maraviroc


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRV
Query on MRV

A, B 4,4-difluoro-N-[(1S)-3-{(3-exo)-3-[3-methyl- 5-(propan-2-yl)-4H-1,2,4-triazol-4-yl]-8- azabicyclo[3.2.1]oct-8-yl}-1-phenylpropyl]cyclohexanecarboxamide
C29 H41 F2 N5 O
GSNHKUDZZFZSJB-QYOOZWMWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLC
Query on OLC

A, B (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.216
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.92 α = 90.00
b = 103.52 β = 90.00
c = 137.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-19
  • Released Date: 2013-09-11
  • Deposition author(s): Tan, Q., Zhu, Y., Han, G.W., Li, J., Fenalti, G., Liu, H., Cherezov, V., Stevens, R.C., GPCR Network (GPCR), Zhao, Q., Wu, B.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update
  • 2013-09-25
    Type: Citation | Details: Citation update