4MBO

1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from Streptococcus agalactiae

Structural Biology Knowledgebase: 4MBO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.154

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4MBO

Classification: PROTEIN BINDING

Total Structure Weight: 38233.78

Macromolecule Entities
Molecule Chains Length Organism Details
Serine-rich Repeat Adhesion Glycoprotein (Srr1) A 340 Streptococcus agalactiae Fragment: UNP residues 311-641
Gene Name(s): gbs1529

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MLZ
Query on MLZ
A L-PEPTIDE LINKING C7 H16 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.154
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.36 α = 90.00
b = 83.24 β = 90.00
c = 57.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-19
  • Released Date: 2013-11-06
  • Deposition author(s): Minasov, G., Shuvalova, L., Dubrovska, I., Winsor, J., Seo, H.S., Seepersaud, R., Doran, K.S., Iverson, T.M., Sullam, P.M., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2014-01-01
    Type: Citation | Details: Citation update
  • 2013-11-13
    Type: Citation | Details: Citation update