4M6I

Structure of the reduced, Zn-bound form of Mycobacterium tuberculosis peptidoglycan amidase Rv3717

Structural Biology Knowledgebase: 4M6I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M6I

Classification: HYDROLASE

Total Structure Weight: 46995.46

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidoglycan Amidase Rv3717 A, B 225 Mycobacterium tuberculosis EC#: 3.5 IUBMB
Fragment: UNP residues 20-241
Gene Name(s): MT3820

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.197
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 125.43 α = 90.00
b = 45.94 β = 116.30
c = 68.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-09
  • Released Date: 2013-09-18
  • Deposition author(s): Prigozhin, D.M., Mavrici, D., Huizar, J.P., Vansell, H.J., Alber, T., TB Structural Genomics Consortium (TBSGC)

Revision History

  • 2013-11-20
    Type: Citation | Details: Citation update
  • 2013-10-09
    Type: Citation | Details: Citation update